COVID 19 Resources: Data, Analytics, & Visualizations

currently available in GenBank and the Sequence Read Archive (SRA)

Nucleotide sequences of the SARS-CoV-2 virus (the virus associated with the COVID-19 disease, formerly known as 2019-nCoV) including location, collection time and similar supporting data. Wolfram Research, "Genetic Sequences for the SARS-CoV-2 Coronavirus" from the Wolfram Data Repository (2020).

To accelerate drug development, researchers from the Broad Institute’s Cancer Program, Center for the Development of Therapeutics, and Connectivity Map project have created the Drug Repurposing Hub, an open-access repository of more than 6,000 compounds, many of which have been FDA approved. The Broad’s Drug Repurposing Hub is open-access. Any researcher can log-in, look up, and download the information contained in the Hub...search based on the characteristics of a specific compound or drug target.

...developing machine learning methods for finding promising antiviral molecules for COVID-19 and other emerging pathogens. We are excited to encourage experimentation and collaboration in this space. To that end, we are working with our collaborators to open-source data related to the SARS-CoV-2 effort. All our data may be found here.

The protein-protein interaction (PPI) network presented here was generated through the joint efforts of UCSF's QCRG (QBI Coronavirus Research Group).
http://qbi.ucsf.edu/COVID-19

Visualizing the Virus is an international digital project that showcases and investigates the diverse ways in which SARS-Cov2 and the COVID-19 pandemic is visualized and the inequalities it makes visible.

Monitor your county's most recent data for:

• Cases
• Virus lab tests
• Hospital utilization
• Deaths

and you can get the raw numbers or cases per 100,000 population.

...this site tracks each state's progress towards the critical interventions needed to stop the spread of COVID-19. ...Our focus is the data available on the ground and how we can surface it in meaningful ways for state and local leaders to act on.

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SimplyAnalytics is a web-based mapping, analytics, and data visualization application that makes it easy for anyone to create interactive maps, charts, and reports using 100,000+ data variables. COVID19 data now included.

Maintained by UC San Diego experts in environmental, biomedical sciences, and emergency preparedness- The goal is to collect, manage, analyze, visualize and map local data related to respiratory illnesses (including COVID-19) and combine it with research on measurements of viruses and bacteria in polluted coastal regions air and microbiome.

COVIDsearch is intended to provide a unified means of searching across available research preprints, publications, and clinical trial information.

over 51,000 scholarly articles, including over 40,000 with full text, about COVID-19 and the coronavirus family of viruses for use by the global research community.
This dataset is intended to mobilize researchers to apply recent advances in natural language processing to generate new insights in support of the fight against this infectious disease.

...a curated literature hub for tracking scientific information about the 2019 novel Coronavirus...a comprehensive resource on the subject, providing a central access to 16405 (and growing) relevant articles in PubMed...articles are updated daily and are further categorized by different research topics and geographic locations for improved access. Citations and text are available for downloading, text and data mining.

This dashboard provides data for UC San Diego students and campus employees (including general campus and Scripps Institute of Oceanography).

Source: County of San Diego, Health and Human Services Agency, Public Health Services, Epidemiology and Immunization Services Branch

Confirmed cases and deaths over time. Updated daily. Searchable by country, territory, or area

….dashboards vary greatly in terms of completeness and transparency. A lack of transparency or completeness can deprive students, employees and families of crucial contextual information they need to make decisions about their safety and make it hard to make comparisons. Ratings in this resource are solely based on the information provided on the dashboard and do not evaluate the implementation of Covid-19 plans and mitigation strategies. We include community data because it is essential that all schools acknowledge the potential effects on and from surrounding communities. We will revise our rating schema as needed, based on further input from stakeholders.

National and state level forecasts: CDC works with partners to bring together weekly forecasts for COVID-19 deaths in one place. These forecasts have been developed independently and shared publicly.

Covid Act Now is a multidisciplinary team of technologists, epidemiologists, health experts, and public policy leaders working to provide disease intelligence and data analysis on COVID in the U.S.

This forecasting model combines the signal of a discrete stochastic epidemic computational model GLEAM (Global Epidemic and Mobility Model) with a deep learning spatiotemporal forecasting framework to further improve predictions to study the spatiotemporal COVID-19 spread. The hybrid model leverages rich real-world data about COVID-19: when a person has been infected; where they have traveled; death records; travel and re-opening restrictions from all 50 states.

The Institute for Disease Modeling’s (IDM) InfoHub contains epidemiological information and analyses about COVID-19 performed in the context of rapidly changing and dynamic circumstances.

...COVID-19 Data Portal will bring together and continuously update relevant COVID-19 datasets and tools, will host sequence data sharing and will facilitate access to other SARS-CoV-2 resources.

The Lens has assembled free and open datasets of patent documents, scholarly research works metadata and biological sequences from patents, and deposited them in a machine-readable and explorable form.

The National Center for Health Statistics (NCHS) is a rich source of data for researchers, teachers, and students who want to perform data analysis. This page compiles key sources of information found on the NCHS website for those who are interested in analysis of NCHS data as well as documentation and methodology of NCHS data systems.